Publications

 

This is a listing of published papers (PubMed, Google Scholar, ORCID, ResearchGate, ). Articles marked with * appeared with the note “These authors contributed equally”. Scroll to the bottom of the list for articles that appeared as part of conference proceedings.

Journal Papers

  1. Ahmed Salih, Maddalena Ardissino, Aaron Z. Wagen, Andrew Bard, Liliana Szabo, Mina Ryten, Steffen E. Petersen, André Altmann and Zahra Raisi‐Estabragh
    Genome‐Wide Association Study of Pericardial Fat Area in 28 161 UK Biobank Participants
    JAHA, 2023, (in press). https://doi.org/10.1161/JAHA.123.030661
  2. Yukun Zhou, Mark A Chia, Siegfried K Wagner, Murat S Ayhan, Dominic J Williamson, Robbert R Struyven, Timing Liu, Moucheng Xu, Mateo G Lozano, Peter Woodward-Court, Yuka Kihara, Andre Altmann, Aaron Y Lee, Eric J Topol, Alastair K Denniston, Daniel C Alexander, Pearse A Keane
    A foundation model for generalizable disease detection from retinal images.
    Nature, 2023, 622, 156–163. https://doi.org/10.1038/s41586-023-06555-x
  3. Carlos Estevez-Fraga, Andre Altmann, Christopher S Parker, Rachael Scahill, Beatrice Costa, Zhongbo Chen, Claudia Manzoni, Angeliki Zarkali, Alexandra Durr, Raymund AC Roos, Bernhard Landwehrmeyer, Blair R Leavitt, Geraint Rees, Sarah J Tabrizi, Peter McColgan
    Genetic topography and cortical cell loss in Huntington’s disease link development and neurodegeneration.
    Brain, 2023, awad275. https://doi.org/10.1093/brain/awad275
  4. Leon Aksman, Neil Oxtoby, Marzia Scelsi, Peter Wijeratne, Alex Young, Isadora Lopes Alves, Lyduine Collij, Jake Vogel, Frederik Barkhof, Daniel Alexander, Andre Altmann
    A data-driven study of Alzheimer’s disease related amyloid and tau pathology progression
    Brain, 2023, (in press) [pre-print]
  5. Ana Lawry Aguila, Alejandra Jayme, Nina Montaña-Brown, Vincent Heuveline, Andre Altmann
    Multi-view-AE: A Python package for multi-view autoencoder models
    Journal of Open Source Software, 2023, 8(85), 5093, https://doi.org/10.21105/joss.05093
  6. Hanyi Chen, Alexandra Young, Neil P Oxtoby, Frederik Barkhof, Daniel C Alexander, Andre Altmann
    Transferability of Alzheimer’s disease progression subtypes to an independent population cohort
    NeuroImage, 2023, 271, 120005
  7. Eric de Silva, Carole H Sudre, Jo Barnes, Marcia A Scelsi, Andre Altmann
    Polygenic coronary artery disease association with brain atrophy in the cognitively impaired 
    Brain Communications2022;4(6):fcac314. doi: 10.1093/braincomms/fcac314.
  8. Ahmed Salih, Ilaria B Galazzo, Steffen E Petersen, Karim Lekadir, Petia Radeva, Gloria Menegaz, Andre Altmann
    Telomere length is causally connected to brain MRI image derived phenotypes: A mendelian randomization study. 
    PLoS One2022;17(11):e0277344. doi: 10.1371/journal.pone.0277344. 
  9. Mohammed Janahi, Leon M Aksman, Jonathan M Schott, Younes Mokrab, Andre Altmann
    Nomograms of human hippocampal volume shifted by polygenic scores
    Elife, 2022, 11, e78232
  10. Seymour M Lopez, Leon M Aksman, Neil P Oxtoby, Sjoerd B. Vos, Jun Rao, …., Carrie R McDonald, Daniel C Alexander, Sanjay M Sisodiya, Andre Altmann, The ENIGMA Epilepsy Working Group
    Event-based modelling in temporal lobe epilepsy demonstrates progressive atrophy from cross-sectional data
    Epilepsia, 2022, (in press). doi: https://doi.org/10.1111/epi.17316
  11. Suhnyoung Jun, Thomas H Alderson, Andre Altmann, Sepideh Sadaghiani
    Dynamic trajectories of connectome state transitions are heritable
    NeuroImage, 2022, 256:119274. doi: https://doi.org/10.1016/j.neuroimage.2022.119274
  12. Derek S Andrews, Leon Aksman, Connor M Kerns, Joshua K Lee, Breanna M Winder-Patel, Danielle Jenine Harvey, Einat Waizbard-Bartov, Brianna Heath, Marjorie Solomon, Sally J Rogers, Andre Altmann, Christine Wu Nordahl, David G Amaral
    Association of amygdala development with different forms of anxiety in autism spectrum disorder
    Biological Psychiatry, 2022, 91(11), 977-987.
  13. Leon M.Aksman, Peter A.Wijeratne, Neil P. Oxtoby, Arman Eshaghi, Cameron Shand, Andre Altmann, Daniel C. Alexander, Alexandra L. Young
    pySuStaIn: A Python implementation of the Subtype and Stage Inference algorithm
    SoftwareX, 2021, 100811. doi: https://doi.org/10.1016/j.softx.2021.100811
  14. Fatin N Zainul Abidin, Marzia A Scelsi, Sally J Dawson*, Andre Altmann*
    Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort
    NeuroImage: Clinical, 2021, (in press). doi: https://doi.org/10.1016/j.nicl.2021.102823
  15. Ahmed Salih, Ilaria Boscolo Galazzo, Zahra Raisi-Estabragh, Elisa Rauseo, Polyxeni Gkontra, Steffen E Petersen, Karim Lekadir, André Altmann, Petia Radeva, Gloria Menegaz
    Brain Age Estimation at Tract Group Level and its Association with Daily Life Measures, Cardiac Risk Factors and Genetic Variants
    Scientific Reports, 2021 (in press).
  16. Andre Altmann†, Mina Ryten†, Martina Di Nunzio†, Teresa Ravizza, Daniele Tolomeo, Regina H Reynolds, …, ENIGMA-Epilepsy Working Group, …, EpiPGX Consortium, Maria Thom, Christopher D Whelan, Paul Thompson, Carrie R McDonald, Annamaria Vezzani*, Sanjay M Sisodiya*
    A systems-level analysis highlights microglial activation as a modifying factor in common epilepsies
    Neuropathology and Applied Neurobiology, 2021 (in press). doi: https://doi.org/10.1111/nan.12758 [preprint]
  17. Ezequiel Gleichgerrcht, Brent C Munsell, Saud Alhusaini, …, Paul M Thompson, Sanjay M Sisodiya, Carrie R McDonald, Leonardo Bonilha, Andre Altmann, Chantal Depondt, Marian Galovic, Sophia I Thomopoulos, Roland Wiest
    Artificial intelligence for classification of temporal lobe epilepsy with ROI-level MRI data: A worldwide ENIGMA-Epilepsy study
    NeuroImage: Clinical, 2021, 31:102765. doi: https://doi.org/10.1016/j.nicl.2021.102765.
  18. Fatin Zainul Abidin, Helena R. R. Wells,  Andre Altmann*, Sally J. Dawson*
    Hearing difficulty and Alzheimer’s disease are linked by shared common genetic vulnerability rather than shared genetic architecture
    npj Aging and Mechanism of Disease, 2021 (in press). doi: https://doi.org/10.1038/s41514-021-00069-4
  19. Simona Balestrini, Seymour M Lopez, Krishna Chinthapalli, Narek Sargsyan, Rita Demurtas, Sjoerd Vos, Andre Altmann, Mike Suttie, Peter Hammond, Sanjay M Sisodiya
    Increased facial asymmetry in focal epilepsies associated with unilateral lesions
    Brain Communications, 2021 (in press). doi: https://doi.org/10.1093/braincomms/fcab068
  20. Michael E. Belloy, Sarah J. Eger, Yann Le Guen, Valerio Napolioni, Kacie D. Deters, Hyun-Sik Yang, Marzia A. Scelsi, Tenielle Porter, Sarah-Naomi James, Andrew Wong, Jonathan M. Schott, Reisa A. Sperling, Simon M. Laws, Elisabeth C. Mormino, Zihuai He, Summer S. Han, Andre Altmann, Michael D. Greicius
    KL*VS Heterozygosity Reduces Brain Amyloid in Asymptomatic at Risk APOE*4 Carriers
    Neurobiology of Aging, 2021 (in press). doi: https://doi.org/10.1016/j.neurobiolaging.2021.01.008
  21. Marzia A Scelsi, Valerio Napolioni, Michael D Greicius, Andre Altmann, Alzheimer’s Disease Neuroimaging Initiative, Alzheimer’s Disease Sequencing Project
    Network propagation of rare mutations in Alzheimer’s disease reveals tissue-specific hub genes and communities
    PLoS Comput Biol, 2020 (in press). pre-print on bioRxiv: doi: https://doi.org/10.1101/781203
  22. Valerio Napolioni, Marzia A. Scelsi, Raiyan R. Khan, Andre Altmann, Michael D. Greicius
    Recent Consanguinity and Outbred Autozygosity are Associated with Increased Risk of Late-Onset Alzheimer’s Disease
    Frontiers In Genetics, 2020, 11:1864. doi: https://doi.org/10.3389/fgene.2020.629373
  23. Andre Altmann, David M Cash, Martina Bocchetta, Carolin Heller, Regina Reynolds, Katrina Moore, Rhian S Convery, David L Thomas, John C van Swieten, Fermin Moreno, Raquel Sanchez-Valle, Barbara Borroni, Robert Laforce, Jr, Mario Masellis, Maria Carmela Tartaglia, Caroline Graff, Daniela Galimberti, James B Rowe, Elizabeth Finger, Matthis Synofzik, Rik Vandenberghe, Alexandre de Mendonça, Fabrizio Tagliavini, Isabel Santana, Simon Ducharme, Chris R Butler, Alex Gerhard, Johannes Levin, Adrian Danek, Giovanni Frisoni, Roberta Ghidoni, Sandro Sorbi, Markus Otto, Mina Ryten, Jonathan D Rohrer, the Genetic FTD Initiative, GENFI
    Analysis of brain atrophy and local gene expression in genetic frontotemporal dementia
    Brain Communications, 2020, fcaa122, https://doi.org/10.1093/braincomms/fcaa122
  24. Sean N Hatton, Khoa H Huynh, Leonardo Bonilha, Eugenio Abela, Saud Alhusaini, Andre Altmann, Marina K M Alvim, Akshara R Balachandra, Emanuele Bartolini, Benjamin Bender, Neda Bernasconi, Andrea Bernasconi, Boris Bernhardt, Núria Bargallo, Benoit Caldairou, Maria E Caligiuri, Sarah J A Carr, Gianpiero L Cavalleri, Fernando Cendes, Luis Concha, Esmaeil Davoodi-bojd, Patricia M Desmond, Orrin Devinsky, Colin P Doherty, Martin Domin, John S Duncan, Niels K Focke, Sonya F Foley, Antonio Gambardella, Ezequiel Gleichgerrcht, Renzo Guerrini, Khalid Hamandi, Akari Ishikawa, Simon S Keller, Peter V Kochunov, Raviteja Kotikalapudi, Barbara A K Kreilkamp, Patrick Kwan, Angelo Labate, Soenke Langner, Matteo Lenge, Min Liu, Elaine Lui, Pascal Martin, Mario Mascalchi, José C V Moreira, Marcia E Morita-Sherman, Terence J O’Brien, Heath R Pardoe, José C Pariente, Letícia F Ribeiro, Mark P Richardson, Cristiane S Rocha, Raúl Rodríguez-Cruces, Felix Rosenow, Mariasavina Severino, Benjamin Sinclair, Hamid Soltanian-Zadeh, Pasquale Striano, Peter N Taylor, Rhys H Thomas, Domenico Tortora, Dennis Velakoulis, Annamaria Vezzani, Lucy Vivash, Felix von Podewils, Sjoerd B Vos, Bernd Weber, Gavin P Winston, Clarissa L Yasuda, Alyssa H Zhu, Paul M Thompson, Christopher D Whelan, Neda Jahanshad, Sanjay M Sisodiya, Carrie R McDonald
    White matter abnormalities across different epilepsy syndromes in adults: an ENIGMA-Epilepsy study
    Brain, 2020, awaa200, https://doi.org/10.1093/brain/awaa200
  25. Sanjay M Sisodiya, Christopher D Whelan, Sean N Hatton, Khoa Huynh, Andre Altmann, Mina Ryten, Annamaria Vezzani, Maria Eugenia Caligiuri, Angelo Labate, Antonio Gambardella, Victoria Ives‐Deliperi, Stefano Meletti, Brent C Munsell, Leonardo Bonilha, Manuela Tondelli, Michael Rebsamen, Christian Rummel, Anna Elisabetta Vaudano, Roland Wiest, Akshara R Balachandra, Núria Bargalló, Emanuele Bartolini, Andrea Bernasconi, Neda Bernasconi, Boris Bernhardt, Benoit Caldairou, Sarah JA Carr, Gianpiero L Cavalleri, Fernando Cendes, Luis Concha, Patricia M Desmond, Martin Domin, John S Duncan, Niels K Focke, Renzo Guerrini, Khalid Hamandi, Graeme D Jackson, Neda Jahanshad, Reetta Kälviäinen, Simon S Keller, Peter Kochunov, Magdalena A Kowalczyk, Barbara AK Kreilkamp, Patrick Kwan, Sara Lariviere, Matteo Lenge, Seymour M Lopez, Pascal Martin, Mario Mascalchi, José CV Moreira, Marcia E Morita‐Sherman, Heath R Pardoe, Jose C Pariente, Kotikalapudi Raviteja, Cristiane S Rocha, Raúl Rodríguez‐Cruces, Margitta Seeck, Mira KHG Semmelroch, Benjamin Sinclair, Hamid Soltanian‐Zadeh, Dan J Stein, Pasquale Striano, Peter N Taylor, Rhys H Thomas, Sophia I Thomopoulos, Dennis Velakoulis, Lucy Vivash, Bernd Weber, Clarissa Lin Yasuda, Junsong Zhang, Paul M Thompson, Carrie R McDonald, ENIGMA Consortium Epilepsy Working Group
    The ENIGMA‐Epilepsy working group: Mapping disease from large data sets
    Human brain mapping, 2020, doi: https://doi.org/10.1002/hbm.25037
  26. Joseph Jacob, Leon Aksman, Nesrin Mogulkoc, Alex J Procter, Bahareh Gholipour, Gary Cross, Joseph Barnett, Christopher J Brereton, Mark G Jones, Coline H van Moorsel, Wouter van Es, Frouke van Beek, Marcel Veltkamp, Sujal R Desai, Eoin Judge, Teresa Burd, Maria Kokosi, Recep Savas, Selen Bayraktaroglu, Andre Altmann, Athol U Wells
    Serial CT analysis in idiopathic pulmonary fibrosis: comparison of visual features that determine patient outcome
    Thorax, 2020, doi: 10.1136/thoraxjnl-2019-213865
  27. Paul M. Thompson, Neda Jahanshad, Christopher R. K. Ching, Lauren E. Salminen, Sophia I. Thomopoulos, Joanna Bright, Bernhard T. Baune, Sara Bertolín, Janita Bralten, Willem B. Bruin, Robin Bülow, Jian Chen, Yann Chye, Udo Dannlowski, Carolien G. F. de Kovel, Gary Donohoe, Lisa T. Eyler, Stephen V. Faraone, Pauline Favre, Courtney A. Filippi, Thomas Frodl, Daniel Garijo, Yolanda Gil, Hans J. Grabe, Katrina L. Grasby, Tomas Hajek, Laura K. M. Han, Sean N. Hatton, Kevin Hilbert, Tiffany C. Ho, Laurena Holleran, Georg Homuth, Norbert Hosten, Josselin Houenou, Iliyan Ivanov, Tianye Jia, Sinead Kelly, Marieke Klein, Jun Soo Kwon, Max A. Laansma, Jeanne Leerssen, Ulrike Lueken, Abraham Nunes, Joseph O’ Neill, Nils Opel, Fabrizio Piras, Federica Piras, Merel C. Postema, Elena Pozzi, Natalia Shatokhina, Carles Soriano-Mas, Gianfranco Spalletta, Daqiang Sun, Alexander Teumer, Amanda K. Tilot, Leonardo Tozzi, Celia van der Merwe, Eus J. W. Van Someren, Guido A. van Wingen, Henry Völzke, Esther Walton, Lei Wang, Anderson M. Winkler, Katharina Wittfeld, Margaret J. Wright, Je-Yeon Yun, Guohao Zhang, Yanli Zhang-James, Bhim M. Adhikari, Ingrid Agartz, Moji Aghajani, André Aleman, Robert R. Althoff, Andre Altmann, Ole A. Andreassen, David A. Baron, Brenda L. Bartnik-Olson, Janna Marie Bas-Hoogendam, Arielle R. Baskin-Sommers, Carrie E. Bearden, Laura A. Berner, Premika S. W. Boedhoe, Rachel M. Brouwer, Jan K. Buitelaar, Karen Caeyenberghs, Charlotte A. M. Cecil, Ronald A. Cohen, James H. Cole, Patricia J. Conrod, Stephane A. De Brito, Sonja M. C. de Zwarte, Emily L. Dennis, Sylvane Desrivieres, Danai Dima, Stefan Ehrlich, Carrie Esopenko, Graeme Fairchild, Simon E. Fisher, Jean-Paul Fouche, Clyde Francks, Sophia Frangou, Barbara Franke, Hugh P. Garavan, David C. Glahn, Nynke A. Groenewold, Tiril P. Gurholt, Boris A. Gutman, Tim Hahn, Ian H. Harding, Dennis Hernaus, Derrek P. Hibar, Frank G. Hillary, Martine Hoogman, Hilleke E. Hulshoff Pol, Maria Jalbrzikowski, George A. Karkashadze, Eduard T. Klapwijk, Rebecca C. Knickmeyer, Peter Kochunov, Inga K. Koerte, Xiang-Zhen Kong, Sook-Lei Liew, Alexander P. Lin, Mark W. Logue, Eileen Luders, Fabio Macciardi, Scott Mackey, Andrew R. Mayer, Carrie R. McDonald, Agnes B. McMahon, Sarah E. Medland, Gemma Modinos, Rajendra A. Morey, Sven C. Mueller, Pratik Mukherjee, Leyla Namazova-Baranova, Talia M. Nir, Alexander Olsen, Peristera Paschou, Daniel S. Pine, Fabrizio Pizzagalli, Miguel E. Rentería, Jonathan D. Rohrer, Philipp G. Sämann, Lianne Schmaal, Gunter Schumann, Mark S. Shiroishi, Sanjay M. Sisodiya, Dirk J. A. Smit, Ida E. Sønderby, Dan J. Stein, Jason L. Stein, Masoud Tahmasian, David F. Tate, Jessica A. Turner, Odile A. van den Heuvel, Nic J. A. van der Wee, Ysbrand D. van der Werf, Theo G. M. van Erp, Neeltje E. M. van Haren, Daan van Rooij, Laura S. van Velzen, Ilya M. Veer, Dick J. Veltman, Julio E. Villalon-Reina, Henrik Walter, Christopher D. Whelan, Elisabeth A. Wilde, Mojtaba Zarei, Vladimir Zelman & for the ENIGMA Consortium
    ENIGMA and global neuroscience: A decade of large-scale studies of the brain in health and disease across more than 40 countries
    Translational Psychiatry, 2020, 10: 100. doi: 10.1038/s41398-020-0705-1
  28. Andre Altmann, Marzia A Scelsi, Maryam Shoai, Eric de Silva, Leon M Aksman, David M Cash, John Hardy, Jonathan M Schott
    A comprehensive analysis of methods for assessing polygenic burden on Alzheimer’s disease pathology and risk beyond APOE
    Brain Communications, 2020, 2(1): fcz047. doi: 10.1093/braincomms/fcz047
  29. Claire Cury, Marzia A Scelsi, Roberto Toro, Vincent Frouin, Eric Artiges, Antoine Grigis, Andreas Heinz, Hervé Lemaître, Jean-Luc Martinot, Jean-Baptiste Poline, Michael N. Smolka, Henrik Walter, Gunter Schumann, Andre Altmann* , Olivier Colliot* and the IMAGEN Consortium
    Genome wide association study of incomplete hippocampal inversion in adolescents
    PlosONE, 2020, 15(1): e0227355. doi: 10.1371/journal.pone.0227355
  30. Leon M Aksman, Marzia A Scelsi, Andre F Marquand, Daniel C Alexander, Sebastien Ourselin, Andre Altmann
    Modeling longitudinal imaging biomarkers with parametric Bayesian multi-task learning
    Human Brain Mapping, 2019, 40(13):3982-4000. doi: 10.1002/hbm.24682 [preprint]
  31. Joseph Jacob, Catherine M. Owens, Alan S. Brody, Thomas Semple, Tom A. Watson, Alistair Calder, Pilar Garcia-Peña, Paolo Toma, Anand Devaraj, Henry Walton, Antonio Moreno-Galdó, Paul Aurora, Alexandra Rice, Timothy J. Vece, Steve Cunningham, Andre Altmann, Athol U. Wells, Andrew G. Nicholson, Andrew Bush
    Evaluation of inter-observer variation for CT identification of childhood interstitial lung disease
    ERJ Open Research, 2019, 5(3). pii: 00100-2019. doi: 10.1183/23120541.00100-2019
  32. Joseph Jacob, Brian Bartholmai, Coline van Moorsel, Srinivasan Rajagopalan, Anand Devaraj, Hendrik van Es, Teng Moua, Frouke van Beek, Ryan Clay, Marcel Veltkamp, Maria Kokosi, Angelo de Lauretis, Eoin Judge, Teresa Burd, Tobias Peikert, Ronald Karwoski, Fabien Maldonado, Elisabetta Renzoni, Toby Maher, Andre Altmann, Athol Wells
    Longitudinal prediction of outcome in idiopathic pulmonary fibrosis using automated CT analysis
    ERJ, 2019 (in press). [preprint]
  33. Marzia A Scelsi, Raiyan R Khan, Marco Lorenzi, Leigh Christopher, Michael D Greicius, Jonathan M Schott, Sebastien Ourselin, Andre Altmann
    Genetic study of multimodal imaging Alzheimer’s disease progression score implicates novel loci
    Brain, 2018, 141(7):2167-2180. doi: 10.1093/brain/awy141
  34. Martina Bocchetta, Juan Eugenio Iglesias, Marzia A Scelsi, David M Cash, M. Jorge Cardoso, Marc Modat, Andre Altmann, Sebastien Ourselin, Jason D Warren, Jonathan D Rohrer
    Hippocampal Subfield Volumetry: Differential Pattern of Atrophy in Different Forms of Genetic Frontotemporal Dementia
     Journal of Alzheimer’s Disease, 2018, 64(2):497-504. doi10.3233/JAD-180195
  35. Joseph Jacob, Brian J. Bartholmai, Srinivasan Rajagopalan, Coline H.M. van Moorsel, Hendrik W van Es, Frouke T van Beek, Marjolijn H.L. Struik, Maria Kokosi, Ryoko Egashira, Anne Laure Brun, Arjun Nair, Simon L.F. Walsh, Gary Cross , Joseph Barnett, Angelo de Lauretis, Eoin P Judge, Sujal Desai, Ronald Karwoski, Sebastien Ourselin, Elisabetta Renzoni, Toby M. Maher, Andre Altmann, Athol U. Wells
    Predicting Outcomes in Idiopathic Pulmonary Fibrosis Using Automated CT Analysis
    Am J Respir Crit Care Med.2018, 198(6):767-776. doi: 10.1164/rccm.201711-2174OC
  36. Marco Lorenzi*, Andre Altmann*, Boris Gutman, Selina Wray, Charles Arber, Derrek P. Hibar, Neda Jahanshad, Jonathan M. Schott, Daniel C. Alexander, Paul M. Thompson, Sebastien Ourselin
    Susceptibility of brain atrophy to TRIB3 in Alzheimer’s disease, evidence from functional prioritization in imaging genetics
    PNAS, 2018, 115(12):3162-3167.  doi: 10.1073/pnas.1706100115
  37. Christopher D Whelan, Andre Altmann, Juan A Botía, Neda Jahanshad, Derrek P Hibar, Julie Absil, Saud Alhusaini, Marina K M Alvim, Pia Auvinen, Emanuele Bartolini, Felipe P G Bergo, Tauana Bernardes, Karen Blackmon, Barbara Braga, Maria Eugenia Caligiuri, Anna Calvo, Sarah J Carr, Jian Chen, Shuai Chen, Andrea Cherubini, Philippe David, Martin Domin, Sonya Foley, Wendy França, Gerrit Haaker, Dmitry Isaev, Simon S Keller, Raviteja Kotikalapudi, Magdalena A Kowalczyk, Ruben Kuzniecky, Soenke Langner, Matteo Lenge, Kelly M Leyden, Min Liu, Richard Q Loi, Pascal Martin, Mario Mascalchi, Marcia E Morita, Jose C Pariente, Raul Rodríguez-Cruces, Christian Rummel, Taavi Saavalainen, Mira K Semmelroch, Mariasavina Severino, Rhys H Thomas, Manuela Tondelli, Domenico Tortora, Anna Elisabetta Vaudano, Lucy Vivash, Felix von Podewils, Jan Wagner, Bernd Weber, Yi Yao, Clarissa L Yasuda, Guohao Zhang, Nuria Bargalló, Benjamin Bender, Neda Bernasconi, Andrea Bernasconi, Boris C Bernhardt, Ingmar Blümcke, Chad Carlson, Gianpiero L Cavalleri, Fernando Cendes, Luis Concha, Norman Delanty, Chantal Depondt, Orrin Devinsky, Colin P Doherty, Niels K Focke, Antonio Gambardella, Renzo Guerrini, Khalid Hamandi, Graeme D Jackson, Reetta Kälviäinen, Peter Kochunov, Patrick Kwan, Angelo Labate, Carrie R McDonald, Stefano Meletti, Terence J O’Brien, Sebastien Ourselin, Mark P Richardson, Pasquale Striano, Thomas Thesen, Roland Wiest, Junsong Zhang, Annamaria Vezzani, Mina Ryten, Paul M Thompson, Sanjay M Sisodiya
    Structural brain abnormalities in the common epilepsies assessed in a worldwide ENIGMA study
    Brain, 2018, 141(2), 391–408.  doi: 10.1093/brain/awx341
  38. Sepideh Sadaghiani, Bernard Ng, Andre Altmann, Jean-Baptiste Poline, Tobias Banaschewski, Arun L.W. Bokde, Uli Bromberg, Christian Büchel, Erin Burke Quinlan, Patricia Conrod, Sylvane Desrivières, Herta Flor, Vincent Frouin, Hugh Garavan, Penny Gowland, Jürgen Gallinat, Andreas Heinz, Bernd Ittermann, Jean-Luc Martinot, Marie-Laure Paillère Martinot, Hervé Lemaitre, Frauke Nees, Dimitri Papadopoulos Orfanos, Tomáš Paus, Luise Poustka, Sabina Millenet, Juliane H. Fröhner, Michael N. Smolka, Henrik Walter, Robert Whelan, Gunter Schumann, Valerio Napolioni and Michael Greicius
    Overdominant effect of a CHRNA4 polymorphism on cingulo-opercular network activity and cognitive control
    Journal of Neuroscience, 2017, 37(40):9657-9666.  doi: 10.1523/JNEUROSCI.0991-17.2017
  39. Andre Altmann*, Manuel S Schröter*, Victor I Spoormaker, Sara A Kiem, Denis Jordan, Rüdiger Ilg, Ed T Bullmore, Michael D Greicius, Michael Czisch, Philipp G Sämann
    Validation of non-REM sleep stage decoding from resting state fMRI using linear support vector machines
    NeuroImage, 2016, 125, 544-555. doi: 10.1016/j.neuroimage.2015.09.072
  40. Janine Arloth*, Daniel M Bader*, Simone Röh, Andre Altmann
    Re-Annotator: Annotation Pipeline for Microarray Probe Sequences
    PLoS ONE, 2015, 10(10): e0139516. doi:10.1371/journal.pone.0139516 [preprint @ bioRxiv]
  41. Andre Altmann, Bernard Ng, Susan Landau, William Jagust, Michael D Greicius
    Regional Brain Hypometabolism Is Unrelated to Regional Amyloid Plaque Burden
    Brain, 2015, 138 (12), 3743-3746. doi: 10.1093/brain/awv278
  42. Jonas Richiardi*, Andre Altmann*, Anna-Clare Milazzo, Catie Chang, M. Mallar Chakravarty, Tobias Banaschewski, Gareth J. Barker, Arun L.W. Bokde, Uli Bromberg, Christian Büchel, Patricia Conrod, Mira Fauth-Bühler, Herta Flor, Vincent Frouin, Jürgen Gallinat, Hugh Garavan, Penny Gowland, Andreas Heinz, Hervé Lemaître, Karl F. Mann, Jean-Luc Martinot, Frauke Nees, Tomáš Paus, Zdenka Pausova, Marcella Rietschel, Trevor W. Robbins, Michael N. Smolka, Rainer Spanagel, Andreas Ströhle, Gunter Schumann, Mike Hawrylycz, Jean-Baptiste Poline, Michael D. Greicius and the IMAGEN consortium
    Correlated gene expression supports synchronous activity in brain networks
    Science, 2015, 348 (6240),1241-1244. doi: 10.1126/science.1255905
  43. Janine Arloth, Ryan Bogdan, Peter Weber, Goar Frishman, Andreas Menke, Klaus V Wagner, Georgia Balsevich, Mathias V. Schmidt, Nazanin Karbalai, Darina Czamara, Andre Altmann, Dietrich Trümbach, Wolfgang Wurst, Divya Mehta, Manfred Uhr, Torsten Klengel, Angelika Erhardt, Caitlin E. Carey, Emily Drabant Conley, Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium (PGC), Andreas Ruepp, Bertram Müller-Myhsok, Ahmad R. Hariri, and Elisabeth B. Binder
    Genetic Differences in the Immediate Transcriptome Response to Stress Predict Risk-Related Brain Function and Psychiatric Disorders
    Neuron, 2015, 86(5):1189-1202. http://dx.doi.org/10.1016/j.neuron.2015.05.034
  44. Julia Brenndörfer, André Altmann, Regina Widner-Andrä, Benno Pütz, Darina Czamara, Erik Tilch, Tony Kam-Thong, Peter Weber, Monika Rex-Haffner, Thomas Bettecken, Andrea Bultmann, Bertram Müller-Myhsok, Elisabeth E Binder, Rainer Landgraf, Ludwig Czibere
    Connecting Anxiety and Genomic Copy Number Variation: a Genome-Wide Analysis in Mice
    PLoS ONE, 2015, 10(5):e0128465. doi: 10.1371/journal.pone.0128465.
  45. Andre Altmann, Lu Tian, Victor W Henderson, Michael D Greicius
    Sex modifies APOE-related risk of developing Alzheimer’s Disease
    Annals of Neurology, 2014, 75:563–573. doi: 10.1002/ana.24135
  46. Christiana Labermaier, Christine Kohl, Jakob Hartmann, Christian Devigny, Andre Altmann, Peter Weber, Janine Arloth, Carina Quast, Klaus V Wagner, Sebastian H Scharf, Ludwig Czibere, Regina Widner-Andrä, Julia Brenndörfer, Rainer Landgraf, Felix Hausch, Ken A Jones, Marianne B Müller, Manfred Uhr, Florian Holsboer, Elisabeth B Binder, Mathias V Schmidt
    A polymorphism in the crhr1 gene determines stress vulnerability in male mice
    Endocrinology, 2014, 155(7):2492–2499. doi: 10.1210/en.2013-1986
  47. Leo Unger, Andre Altmann, Michael D Greicius
    Apolipoprotein E, Gender, and Alzheimer’s Disease: An Overlooked, but Potent and Promising Interaction
    Brain Imaging and Behavior, 2014, 8(2):262-73. doi:10.1007/s11682-013-9272-x
  48. Carina Quast, Serena Cuboni, Daniel Bader, André Altmann, Peter Weber, Janine Arloth, Simone Röh, Tanja Brückl, Marcus Ising, Anna Kopczak, Angelika Erhardt, Felix Hausch, Susanne Lucae, Elisabeth Binder
    Functional coding variants in SLC6A15, a possible risk gene for major depression
    PLoS ONE, 2013, 8(7):e68645. doi:10.1371/journal.pone.0068645
  49. Divya Mehta, Torsten Klengel, Karen N Conneely, Alicia K Smith, Andre Altmann, Thaddeus W Pace, Monika Rex-Haffner, Anne Loeschner, Mariya Gonik, Kristina B Mercer, Bekh Bradley, Bertram Müller-Myhsok, Kerry J. Ressler, Elisabeth Binder
    Childhood maltreatment is associated with distinct genomic and epigenetic profiles in posttraumatic stress disorder
    PNAS, 2013, 110(20): 8302–7. doi: 10.1073/pnas.1217750110.
  50. Andre Altmann, Carina Quast, Peter Weber
    Detecting Rare Variants for Psychiatric Disorders Using Next Generation Sequencing: A Methods Primer
    Current Psychiatry Reports, 2012, 15:333. doi: 10.1007/s11920-012-0333-4
  51. Benno Puetz, Tony Kam-Thong, Nazanin Karbalai, Andre Altmann, Bertram Mueller-Myhsok
    Cost-effective GPU-Grid for Genome-wide Epistasis Calculations
    Methods of Information in Medicine, 2013, 53:93-97. doi: 10.3414/ME11-02-0049
  52. Andre Altmann, Peter Weber, Daniel Bader, Michael Preuss, Elisabeth B Binder, Bertram Mueller-Myhsok
    A Beginners Guide To SNP Calling From High-Throughput DNA-Sequencing Data
    Human Genetics, 2012, 131(10):1541-1554. doi: 10.1007/s00439-012-1213-z
  53. Carina Quast, Andre Altmann, Janine Arloth, Daniel Bader, Angela Heck, Hildegard Pfister, Bertram Mueller-Myhsok, Angelika Erhardt, Elisabeth B Binder
    Rare variants in TMEM132D in a case-control sample for panic disorder
    Am J Med Genet Part B, 2012, 159B(8):896-907. doi: 10.1002/ajmg.b.32096
  54. Tony Kam-Thong*, Chloe-Agathe Azencott*, Lawrence Cayton, Benno Puetz, Andre Altmann, Nazanin Karbalai, Philipp G Saemann, Bernhard Schoelkopf, Bertram Mueller-Myhsok+, Karsten M. Borgwardt+
    GLIDE: GPU-Based Linear Regression for Detection of Epistasis
    Hum Hered, 2012, 73:220-236. doi: 10.1159/000341885
  55. Mark Oette, Eugen Schülter, Michal Rosen-Zvi, Yardena Peres, Maurizio Zazzi, Anders Sönnerborg, Daniel Struck, Andre Altmann, Rolf Kaiser, the EuResist Network Study Group
    Efficacy of Antiretroviral Therapy Switch in HIV-Infected Patients: A 10-Year Analysis of the EuResist Cohort
    Intervirology, 2012, 55:160–166. doi:10.1159/000332018
  56. Maurizio Zazzi, Francesca Incardona, Michal Rosen-Zvi, Mattia Prosperi, Thomas Lengauer, Andre Altmann, Anders Sönnerborg, Tamar Lavee, Eugen Schülter, Rolf Kaiser
    Predicting Response to Antiretroviral treatment by Machine Learning: The EuResist Project
    Intervirology, 2012, 55:123–127. doi:10.1159/000332008
  57. Glenn Lawyer, Andre Altmann, Alexander Thielen, Maurizio Zazzi, Anders Sönnerborg, Thomas Lengauer
    HIV-1 mutational pathways under multidrug therapy
    AIDS Research and Therapy, 2011, 8:26. doi:10.1186/1742-6405-8-26
  58. Hiroto Saigo*, Andre Altmann*, Jasmina Bogojeska, Fabian Müller, Sebastian Nowozin, Thomas Lengauer
    Learning from past treatments and their outcome improves prediction of in vivo response to anti-HIV therapy
    Statistical Applications in Genetics and Molecular Biology, 2011, 10(1), art6. doi:10.2202/1544-6115.1604
  59. Mattia CF Prosperi, Michal Rosen-Zvi, Andre Altmann, Maurizio Zazzi, Simona Di Giambenedetto, Rolf Kaiser, Eugen Schülter, Daniel Struck, Peter Sloot, David A. van de Vijver, Anne-Mieke Vandamme, Anders Sönnerborg, for the EuResist and Virolab study groups
    Antiretroviral Therapy Optimisation without Genotype Resistance Testing: A Perspective on Treatment History Based Models
    PLoS ONE, 2010, 5:10, e13753. doi:10.1371/journal.pone.0013753
  60. Jasmina Bogojeska, Steffen Bickel, Andre Altmann, Thomas Lengauer
    Dealing with sparse data in predicting outcomes of HIV combination therapies
    Bioinformatics, 2010, 26:17, 2085-2092. doi:10.1093/bioinformatics/btq361
  61. Maurizio Zazzi, Rolf Kaiser, Anders Sönnerborg, Daniel Struck, Andre Altmann, Mattia Prosperi, Michal Rosen-Zvi, Andrea Petroczi, Yardena Peres, Eugen Schülter, Charles Boucher, Francoise Brun-Vezinet, Richard Harigan, Lynn Morris, Martin Obermeier, Carlo Federico Perno, Robert Shafer, Anne-Mieke Vandamme, Kristel van Laethem, Annemarie Wensing, Thomas Lengauer, Francesca Incardona
    Prediction of Response to Antiretroviral Therapy by Human Experts and by the EuResist Data-Driven Expert System (the EVE Study)
    HIV Medicine, 2010. doi:10.1111/j.1468-1293.2010.00871.x
  62. Andre Altmann*, Laura Tolosi*, Oliver Sander, Thomas Lengauer
    Permutation importance: a corrected feature importance measure
    Bioinformatics, 2010, 26:10, 1340-1347. doi:10.1093/bioinformatics/btq134
    Pre-Print PDF Supplementary material Source Code
  63. Hendrik Weisser, Andre Altmann, Saleta Sierra, Francesca Incardona, Daniel Struck, Anders Sönnerborg, Rolf Kaiser, Maurizio Zazzi, Monika Tschochner, Hauke Walter, Thomas Lengauer
    Only slight impact of predicted replicative capacity for therapy response prediction
    PLoS ONE, 2010, 5:2, e9044. doi:10.1371/journal.pone.0009044
  64. Thomas Lengauer, Andre Altmann, Alexander Thielen, Rolf Kaiser
    Chasing the AIDS virus
    Communications of the ACM, 2010, 53:3, 66-74. doi:10.1145/1666420.1666440
  65. Thomas Lengauer, Andre Altmann, Alexander Thielen
    Bioinformatische Unterstützung der Auswahl von HIV-Therapien
    Informatik-Spektrum, 2009, 32:4, 320-331. doi:10.1007/s00287-009-0352-7
  66. Nadine Sichtig, Saleta Sierra, Rolf Kaiser, Martin Däumer, Stefan Reuter, Eugen Schülter, Andre Altmann, Gerd Fätkenheuer, Ulf Dittmer, Herbert Pfister, Stefan Esser
    Evolution of Raltegravir Resistance During Therapy
    Journal of Antimicrobial Chemotherapy, 2009, 64, 25-32. doi:10.1093/jac/dkp153
  67. Mattia CF Prosperi, Andre Altmann, Michal Rosen-Zvi, Ehud Aharoni, Gabor Borgulya, Fulop Bazso, Anders Sönnerborg, Yarenda Peres, Eugen Schülter, Daniel Struck, Giovanni Ulivi, Francesca Incardona, Anne-Mieke Vandamme, Jürgen Vercauteren and Maurizio Zazzi for the EuResist and Virolab study groups
    Investigation of Expert Rule Bases, Logistic Regression, and Non-Linear Machine Learning Techniques for Predicting Response to Antiretroviral Treatment
    Antiviral Thearapy, 2009, 14: 433-442.
  68. Andre Altmann*, Tobias Sing*, Hans Vermeiren, Bart Winters, Elke Van Craenenbroeck, Koen Van der Borght, Soo-Yon Rhee, Robert W Shafer, Eugen Schülter, Rolf Kaiser, Yardena Peres, Anders Sönnerborg, W Jeffrey Fessel, Francesca Incardona, Maurizio Zazzi, Lee Bacheler, Herman Van Vlijmen, Thomas Lengauer
    Advantages of Predicted Phenotypes and Statistical Learning Models in Inferring Virological Response to Antiretroviral Therapy from HIV Genotype
    Antiviral Thearapy, 2009, 14: 273-283.
  69. Andre Altmann, Martin Däumer, Niko Beerenwinkel, Yardena Peres, Eugen Schülter, Joachim Büch, Soo-Yon Rhee, Anders Sönnerborg, Jeffrey Fessel, Robert W Shafer, Maurizio Zazzi, Rolf Kaiser and Thomas Lengauer
    Predicting response to combination antiretroviral therapy: retrospective validation of geno2pheno-THEO on a large clinical database
    Journal of Infectious Diseases, 2009, 199(7), 999-1006.
  70. Andre Altmann, Michal Rosen-Zvi , Mattia Prosperi, Ehud Aharoni, Hani Neuvirth, Anders Sönnerborg, Eugen Schülter, Joachim Büch, Daniel Struck, Yardena Peres, Francesca Incardona, Rolf Kaiser, Maurizio Zazzi and Thomas Lengauer
    Comparison of Classifier Fusion Methods for Predicting Response to Anti HIV-1 Therapy
    PLoS ONE, 2008, 3(10): e3470.
  71. Jasmina Bogojeska, Adrian Alexa, Andre Altmann, Thomas Lengauer and Jörg Rahnenführer
    Rtreemix: an R package for estimating evolutionary pathways and genetic progression scores
    Bioinformatics, 2008, 24 (20): 2391.
  72. Andre Altmann, Niko Beerenwinkel, Tobias Sing, Igor Savenkov, Martin Däumer, Rolf Kaiser, Soo-Yon Rhee, W Jeffrey Fessel, Robert W Shafer and Thomas Lengauer
    Improved prediction of response to antiretroviral combination therapy using the genetic barrier to drug resistance
    Antiviral Therapy, 2007, 12 (2):169-178.

Conference Papers

  1. Ana Lawry Aguila, James Chapman, Andre Altmann
    Multi-modal Variational Autoencoders for normative modelling across multiple imaging modalities
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2023. [pre-print]
  2. Ana Lawry Aguila, James Chapman, Mohammed Janahi, Andre Altmann
    Conditional VAEs for Confound Removal and Normative Modelling of Neurodegenerative Diseases.
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2022, 430-440.
  3. Heba Elshatoury, Federica Cruciani, Francesco Zumerle, Silvia F Storti, André Altmann, Marco Lorenzi, Gholamreza Anbarjafari, Gloria Menegaz, Ilaria Boscolo Galazzo
    Disentangling the association between genetics and functional connectivity in Mild Cognitive Impairment
    IEEE EMBS International Conference on Biomedical and Health Informatics (BHI), 2021, 1-4.
  4. Santiago Silva, Andre Altmann, Boris Gutman, Marco Lorenzi
    Fed-BioMed: A General Open-Source Frontend Framework for Federated Learning in Healthcare.
    Domain Adaptation and Representation Transfer, and Distributed and Collaborative Learning. DART 2020, DCL 2020. 2020, Lecture Notes in Computer Science, vol 12444. Springer, Cham. https://doi.org/10.1007/978-3-030-60548-3_20
  5. Andre Altmann, Janaina Mourao-Miranda
    Evidence for bias of genetic ancestry in resting state functional MRI
    IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), 2019, 275 – 279. doi: 10.1109/ISBI.2019.8759284
  6. Santiago Silva, Boris Gutman, Eduardo Romero, Paul M Thompson, Andre Altmann, Marco Lorenzi
    Federated Learning in Distributed Medical Databases: Meta-Analysis of Large-Scale Subcortical Brain Data
    IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), 2019, 270 – 274. doi: 10.1109/ISBI.2019.8759317
  7. Marco Lorenzi, Boris Gutman, Paul M Thompson, Daniel C Alexander, Sebastien Ourselin, Andre Altmann
    Secure multivariate large-scale multi-centric analysis through on-line learning: an imaging genetics case study
    12th International Symposium on Medical Information Processing and Analysis (SIPAIM 2016), 2016. doi: 10.1117/12.2256799
  8. Marco Lorenzi, Boris Gutman, Derrek P Hibar, Andre Altmann, Neda Jahanashad, Paul M Thompson, Sebastien Ourselin
    Partial Least Squares Modelling For Imaging-Genetics in Alzheimer’s Disease: Plausibility and Generalization
    International Symposium on Biomedical Imaging (ISBI 2016), 2016. doi: 10.1109/ISBI.2016.7493396
  9. Bernard Ng, Anna-Claire Milazzo, Andre Altmann
    Node-based Gaussian Graphical Model for Identifying Discriminative Brain Regions from Connectivity Graphs
    Machine Learning in Medical Imaging, Lecture Notes in Computer Science, 2015, 9352:44-51. doi:10.1007/978-3-319-24888-2_6 [PDF]
    Best Paper Award!
  10. Andre Altmann, Bernard Ng
    Joint Feature Extraction from Functional Connectivity Graphs with Multi-task Feature Learning
    PRNI 2015, 2015. doi:10.1109/PRNI.2015.17
  11. Jonas Richiardi, Andre Altmann, Michael Greicius
    Two test statistics for cross-modal graph community significance [pdf]
    PRNI 2013, 2013. doi:10.1109/PRNI.2013.27
  12. Andre Altmann, Peter Weber, Carina Quast, Monika Rex-Haffner, Elisabeth B Binder, Bertram Müller-Myhsok
    vipR: variant identification in pooled DNA using R
    Bioinformatics, 2011, 27 (13):i77-84. doi:10.1093/bioinformatics/btr205
  13. Juliane Perner , Andre Altmann and Thomas Lengauer
    Semi-Supervised Learning for Improving Prediction of HIV Drug Resistance
    Lecture Notes in Informatics (Proceedings of GCB2009), 2009
  14. Michal Rosen-Zvi , Andre Altmann, Mattia Prosperi, Ehud Aharoni, Hani Neuvirth, Anders Sönnerborg, Eugen Schülter, Daniel Struck, Yardena Peres, Francesca Incardona, Rolf Kaiser, Maurizio Zazzi and Thomas Lengauer
    Selecting anti-HIV therapies based on a variety of genomic and clinical factors
    Bioinformatics, 2008, 24 (13):i399-406.

Preprints

  1. Andre Altmann, DavidM Cash, Martina Bocchetta, Carolin Heller, Regina Reynolds, Katrina Moore, Rhian S Convery, David L Thomas, John van Swieten, Fermin Moreno, Raquel Sanchez-Valle, Barbara Borroni, Robert Laforce Jr, Mario Masellis, Maria Carmela Tartaglia, Caroline Graff, Daniela Galimberti, James B. Rowe, Elizabeth Finger, Matthis Synofzik, Rik Vandenberghe, Alexandre de Mendonça, Fabrizio Tagliavini, Isabel Santana, Simon Ducharme, Chris Butler, Alex Gerhard, Johannes Levin, Adrian Danek, Giovanni Frisoni, Roberta Ghidoni, Sandro Sorbi, Markus Otto, Mina Ryten, Jonathan D Rohrer, on behalf of the Genetic FTD Initiative, GENFI
    Analysis of brain atrophy and local gene expression implicates astrocytes in Frontotemporal dementia
    bioRxiv, 2019 (dec), doi: 10.1101/2019.12.11.872143
  2. Marzia Antonella Scelsi, Valerio Napolioni, Michael D Greicius, Andre Altmann, Alzheimer’s Disease Neuroimaging Initiative, Alzheimer’s Disease Sequencing Project
    Network propagation of rare mutations in Alzheimer’s disease reveals tissue-specific hub genes and communities
    bioRxiv, 2019 (sep), doi: https://doi.org/10.1101/781203
  3. Paul M Thompson, …, Andre Altmann, …, Vladimir Zelman
    ENIGMA and Global Neuroscience: A Decade of Large-Scale Studies of the Brain in Health and Disease across more than 40 Countries
    PsyArxiv, 2019, doi: https://doi.org/10.31234/osf.io/qnsh7
  4. Leon M Aksman, Marzia A Scelsi, Andre F Marquand, Daniel C Alexander, Sebastien Ourselin, Andre Altmann
    Modeling longitudinal imaging biomarkers with parametric Bayesian multi-task learning
  5. Joseph Jacob, Brian J Bartholmai, Coline H.M. van Moorsel, Srinivasan Rajagopalan, Anand Devaraj, Hendrik W van Es, Teng Moua, Frouke T van Beek, Ryan Clay, Marcel Veltkamp, Maria Kokosi, Angelo de Lauretis, Eoin P Judge, Teresa Burd, Tobias Peikert, Ronald Karwoski, Fabien Maldonado, Elisabetta Renzoni, Toby M Maher, Andre Altmann, Athol U Wells
    Longitudinal prediction of outcome in idiopathic pulmonary fibrosis using automated CT analysis
    bioRxiv, 2018 (dec), doi: https://doi.org/10.1101/493544
  6. Andre Altmann, Mina Ryten, Martina Di Nunzio, Teresa Ravizza, Daniele Tolomeo, Regina H Reynolds, Alyma Somani, Marco Bacigaluppi, Valentina Iori, Edoardo Micotti, Juan A Botia, Julie Absil, Saud Alhusaini, Marina K. M. Alvim, Pia Auvinen, Nuria Bargallo, Emanuele Bartolini, Benjamin Bender, Felipe Bergo, Tauana Bernardes, Andrea Bernasconi, Neda Bernasconi, Boris C Bernhardt, Karen Blackmon, Barbara Braga, Maria E Caligiuri, Anna Cavalo, Chad Carlson, Sarah Carr, Gianpiero Cavalleri, Fernando Cendes, Jian Chen, Shuai Chen, Andrea Cherubini, Luis Concha, Philippe David, Norman Delanty, Chantal Depondt, Orrin Devinsky, Colin P Doherty, Martin Domin, Niels Focke, Sonya Foley, Wendy Franca, Antonio Gambardella, Renzo Guerrini, Khalid Hamandi, Derrek P Hibar, Dmitry Y Isaev, Graeme Jackson, Neda Jahanshad, Reetta Kalviainen, Simon Keller, Peter Kochunov, Raviteja Kotikalapudi, Magdalena A Kowalczyk, Ruben Kuzniecky, Patrick Kwan, Angelo Labate, Soenke Langer, Matteo Lenge, Min Liu, Pascal Martin, Mario Mascalchi, Stefano Meletti, Marcia E Morita, Terence J O’Brien, Jose C Pariente, Mark P Richardson, Raul Rodriguez-Cruces, Christian Rummel, Taavi Saavalainen, Mira K Semmelroch, Mariasavina Severino, Pasquale Striano, Thomas Thesen, Rhys H Thomas, Manuela Tondelli, Domenico Tortora, Anna Elisabetta Vaudano, Lucy Vivash, Felix von Podewils, Jan Wagner, Bernd Weber, Roland Wiest, Clarissa L Yasuda, Guohao Zhang, Junsong Zhang, ENIGMA-Epilepsy Working Group, Costin Leu, Andreja Avbersek, EpiPGX Consortium, Maria Thom, Christopher D Whelan, Paul Thompson, Carrie McDonald, Annamaria Vezzani, Sanjay M Sisodiya
    A systems-level analysis highlights microglial activation as a modifying factor in common forms of human epilepsy
    bioRxiv, 2018 (nov), doi: https://doi.org/10.1101/470518
  7. Andre Altmann,  Janaina Mourao-Miranda
    Evidence for bias of genetic ancestry in resting state functional MRI
    bioRxiv, 2018 (oct), doi: 10.1101/440776
  8. Santiago Silva, Boris Gutman, Eduardo Romero, Paul M Thompson, Andre Altmann, Marco Lorenzi
    Federated Learning in Distributed Medical Databases: Meta-Analysis of Large-Scale Subcortical Brain Data
    arXiv, 2018 (Oct), doi:
  9. Vasiliki Chatzi, Rui Pedro AG Teixeira, John Shawe-Taylor, Andre Altmann, Owen G O’Daly, Daan Christiaens, Jessica Schrouff, J-Donald Tournier
    Grey matter biomarker identification in Schizophrenia: detecting regional alterations and their underlying substrates
    bioRxiv, 2018 (June), doi: 10.1101/357954
  10. Jonas Richiardi, Andre Altmann, Michael D Greicius
    Distance Is Not Everything In Imaging Genomics Of Functional Networks: Reply To A Commentary On Correlated Gene Expression Supports Synchronous Activity In Brain Networks
    bioRxiv, 2017 (May),  doi: 10.1101/132746
  11. Janine Arloth, Daniel M Bader, Simone Röh, Andre Altmann
    Re-Annotator: Annotation Pipeline for Microarrays
    bioRxiv, 2015, doi:10.1101/019596

Book Chapters

  1. Jessica S. Damoiseaux, , Andre Altmann, Jonas Richiardi, and Sepideh Sadaghiani
    Applications of MRI Connectomics
    PsyArXiv. March 1. doi:10.31234/osf.io/u4y8s.
  2. Marco Lorenzi, Andre Altmann
    Imaging Genetics
    in Medical Image Analysis (1st Edition), January 2022
    Editors: A Frangi, J Prince J,  M Sonka
  3. Andre Altmann, Peter Weber
    Targeted Re-Sequencing in Psychiatric Disorders
    in Applied Neurogenomics, Series: Neuromethods, Vol. 97, Springer 2015 Editor: Jain, Kewal K.

Theses

  1. Andre Altmann
    Bioinformatical Approaches to Ranking of anti-HIV Therapies and Planning of Treatment Schedules
    PhD Thesis, Saarland University, Saarbrücken, Germany, 2010.
  2. Andre Altmann
    Lattice Rescoring and Log-Linear System Combination
    Diploma Thesis, RWTH Aaachen, Aachen, Germany, 2005.
 Posted by at 16:54